index	execution_count	cell_type	source	loc	metadata	outputs
1	In	markdown	# executing the mast notebooks the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation. `# executing the mast notebooks the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.`	`{'data': {'text/html': 'executing the mast notebooks \nthe notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.\n'}}`	3	executing the mast notebooks the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.
2	In 15	code	from nobook.utils import Index `from nobook.utils import Index`	`{}`	1	0 outputs.
3	In	markdown	the nbconvert convert template to execute each notebook `the nbconvert convert template to execute each notebook`	`{'data': {'text/html': 'the nbconvert convert template to execute each notebook\n'}}`	1	the nbconvert convert template to execute each notebook
4	In 16	code	execute = """jupyter nbconvert \ --to notebook --inplace \ --execute --allow-errors \ --ExecutePreprocessor.kernel_name=mast_nb %s""" `execute = """jupyter nbconvert \ --to notebook --inplace \ --execute --allow-errors \ --ExecutePreprocessor.kernel_name=mast_nb %s"""`	`{}`	4	0 outputs.
5	In	markdown	an example command run for one notebook `an example command run for one notebook`	`{'data': {'text/html': 'an example command run for one notebook\n'}}`	1	an example command run for one notebook
6	In	markdown	!jupyter nbconvert \ --to notebook --inplace \ --execute \ --allow-errors \ --ExecutePreprocessor.kernel_name=mast_nb \ mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb `!jupyter nbconvert \ --to notebook --inplace \ --execute \ --allow-errors \ --ExecutePreprocessor.kernel_name=mast_nb \ mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb`	`{'data': {'text/html': '!jupyter nbconvert \\\n--to notebook --inplace \\\n--execute \\\n--allow-errors \\\n--ExecutePreprocessor.kernel_name=mast_nb \\\nmast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb\n'}}`	6	`!jupyter nbconvert \ --to notebook --inplace \ --execute \ --allow-errors \ --ExecutePreprocessor.kernel_name=mast_nb \ mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb`
7	In	markdown	doit task to execute all the notebooks `doit task to execute all the notebooks`	`{'data': {'text/html': 'doit task to execute all the notebooks\n'}}`	1	doit task to execute all the notebooks
8	In 17	code	def task_execute(): for file in Index(["mast_notebooks"]).path().glob("*/.ipynb", recursive=True).drop_duplicates(): yield dict( name=str(file), file_dep=[file], actions=[ execute % file ] ) `def task_execute(): for file in Index(["mast_notebooks"]).path().glob("*/.ipynb", recursive=True).drop_duplicates(): yield dict( name=str(file), file_dep=[file], actions=[ execute % file ] )`	`{}`	9	0 outputs.
9	In	markdown	invoke the doit tasks `invoke the doit tasks`	`{'data': {'text/html': 'invoke the doit tasks\n'}}`	1	invoke the doit tasks
10	In 19	code	%reload_ext doit `%reload_ext doit`	`{}`	1	0 outputs.
11	In 20	code	%doit list --all `%doit list --all`	`{}`	1	1 outputs. execute execute:mast_notebooks/contributing/notebook_template/notebook_template.ipynb execute:mast_notebooks/notebooks/GALEX/mis-mosaic/mis_mosaic.ipynb execute:mast_notebooks/notebooks/HSC/HCV_API/HCV_API_demo.ipynb execute:mast_notebooks/notebooks/HSC/HCV_CASJOBS/HCV_casjobs_demo.ipynb execute:mast_notebooks/notebooks/HSC/HSCV3_API/hscv3_api.ipynb execute:mast_notebooks/notebooks/HSC/HSCV3_SMC_API/hscv3_smc_api.ipynb execute:mast_notebooks/notebooks/HSC/HSC_TAP/HSC_TAP.ipynb execute:mast_notebooks/notebooks/HSC/SWEEPS_HSCV3P1/sweeps_hscv3p1.ipynb execute:mast_notebooks/notebooks/HSC/SWEEPS_HSCV3P1_API/sweeps_hscv3p1_api.ipynb execute:mast_notebooks/notebooks/IUE/exploring_UV_extinction_curves/exploring_UV_extinction_curves.ipynb execute:mast_notebooks/notebooks/JWST/Engineering_Database_Retreival/EDB_Retrieval.ipynb execute:mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb execute:mast_notebooks/notebooks/JWST/download_by_program_id/download_by_program_id.ipynb execute:mast_notebooks/notebooks/JWST/duplication_checking/duplication_checking.ipynb execute:mast_notebooks/notebooks/K2/Lightcurve/Lightcurve.ipynb execute:mast_notebooks/notebooks/K2/TPF/TPF.ipynb execute:mast_notebooks/notebooks/K2/beginner_how_to_use_ffi/beginner_how_to_use_ffi.ipynb execute:mast_notebooks/notebooks/K2/removing_instrumental_noise_using_pld/removing_instrumental_noise_using_pld.ipynb execute:mast_notebooks/notebooks/Kepler/creating_periodograms/creating_periodograms.ipynb execute:mast_notebooks/notebooks/Kepler/how_to_estimate_a_stars_mass_and_radius_using_asteroseismology/how_to_estimate_a_stars_mass_and_radius_using_asteroseismology.ipynb execute:mast_notebooks/notebooks/Kepler/how_to_understand_and_manipulate_the_periodogram_of_an_oscillating_star/how_to_understand_and_manipulate_the_periodogram_of_an_oscillating_star.ipynb execute:mast_notebooks/notebooks/Kepler/identifying_transiting_planet_signals/identifying_transiting_planet_signals.ipynb execute:mast_notebooks/notebooks/Kepler/instrumental_noise_1_data_gaps_and_quality_flags/instrumental_noise_1_data_gaps_and_quality_flags.ipynb execute:mast_notebooks/notebooks/Kepler/instrumental_noise_2_spurious_signals_and_time_sampling_effects/instrumental_noise_2_spurious_signals_and_time_sampling_effects.ipynb execute:mast_notebooks/notebooks/Kepler/instrumental_noise_3_seasonal_and_detector_effects/instrumental_noise_3_seasonal_and_detector_effects.ipynb execute:mast_notebooks/notebooks/Kepler/instrumental_noise_4_electronic_noise/instrumental_noise_4_electronic_noise.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_analyzing_lc_products/lightkurve_analyzing_lc_products.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_analyzing_tpf_products/lightkurve_analyzing_tpf_products.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_combining_multiple_quarters/lightkurve_combining_multiple_quarters.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_custom_aperture_photometry/lightkurve_custom_aperture_photometry.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_interactively_inspecting_TPFs_and_LCs/lightkurve_interactively_inspecting_TPFs_and_LCs.ipynb execute:mast_notebooks/notebooks/Kepler/lightkurve_searching_for_data/lightkurve_searching_for_data.ipynb execute:mast_notebooks/notebooks/Kepler/measuring_a_rotation_period/measuring_a_rotation_period.ipynb execute:mast_notebooks/notebooks/Kepler/plotting_catalog_over_FFI/plotting_catalog_over_FFI.ipynb execute:mast_notebooks/notebooks/Kepler/plotting_dvts/plotting_dvts.ipynb execute:mast_notebooks/notebooks/Kepler/plotting_images_from_tpf/plotting_images_from_tpf.ipynb execute:mast_notebooks/notebooks/Kepler/plotting_lightcurves/plotting_lightcurves.ipynb execute:mast_notebooks/notebooks/Kepler/verifying_the_location_of_a_signal/verifying_the_location_of_a_signal.ipynb execute:mast_notebooks/notebooks/Kepler/visualizing_periodic_signals_using_a_river_plot/visualizing_periodic_signals_using_a_river_plot.ipynb execute:mast_notebooks/notebooks/MCCM/FIMS-SPEAR/hyperspectral_healpix_maps/hyperspectral_healpix_maps.ipynb execute:mast_notebooks/notebooks/PanSTARRS/PS1_DR2_TAP/PS1_DR2_TAP.ipynb execute:mast_notebooks/notebooks/PanSTARRS/PS1_image/PS1_image.ipynb execute:mast_notebooks/notebooks/TESS/asteroid_rotation/asteroid_rotation.ipynb execute:mast_notebooks/notebooks/TESS/asteroid_rotation/asteroid_rotation_soutions.ipynb execute:mast_notebooks/notebooks/TESS/beginner_astroquery_dv/beginner_astroquery_dv.ipynb execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_dvt/beginner_how_to_use_dvt.ipynb execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_ffi/beginner_how_to_use_ffi.ipynb execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_lc/beginner_how_to_use_lc.ipynb execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_tp/beginner_how_to_use_tp.ipynb execute:mast_notebooks/notebooks/TESS/beginner_tess_exomast/beginner_tess_exomast.ipynb execute:mast_notebooks/notebooks/TESS/beginner_tess_tap_search/beginner_tess_tap_search.ipynb execute:mast_notebooks/notebooks/TESS/beginner_tesscut_astroquery/beginner_tesscut_astroquery.ipynb execute:mast_notebooks/notebooks/TESS/beginner_tic_search_hd209458/beginner_tic_search_hd209458.ipynb execute:mast_notebooks/notebooks/TESS/beginner_tour_lc_tp/beginner_tour_lc_tp.ipynb execute:mast_notebooks/notebooks/TESS/interm_gi_query/interm_gi_query.ipynb execute:mast_notebooks/notebooks/TESS/interm_tasoc_lc/interm_tasoc_lc.ipynb execute:mast_notebooks/notebooks/TESS/interm_tess_prf_retrieve/interm_tess_prf_retrieve.ipynb execute:mast_notebooks/notebooks/TESS/interm_tesscut_dss_overlay/interm_tesscut_dss_overlay.ipynb execute:mast_notebooks/notebooks/TESS/interm_tesscut_requests/interm_tesscut_requests.ipynb execute:mast_notebooks/notebooks/TESS/removing_scattered_light_using_regression/removing_scattered_light_using_regression.ipynb execute:mast_notebooks/notebooks/astrocut/making_tess_cubes_and_cutouts/making_tess_cubes_and_cutouts.ipynb execute:mast_notebooks/notebooks/astroquery/beginner_search/beginner_search.ipynb execute:mast_notebooks/notebooks/astroquery/beginner_zcut/beginner_zcut.ipynb execute:mast_notebooks/notebooks/astroquery/historic_quasar_observations/historic_quasar_observations.ipynb execute:mast_notebooks/notebooks/astroquery/large_downloads/large_downloads.ipynb execute:mast_notebooks/notebooks/astroquery/wildcard_searches/wildcard_searches.ipynb
12	In	markdown	%doit -n4 --continue `%doit -n4 --continue`	`{'data': {'text/html': '%doit -n4 --continue\n'}}`	1	`%doit -n4 --continue`

# executing the mast notebooks

the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.

# executing the mast notebooks

the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.


        {'data': {'text/html': 'executing the mast notebooks
\nthe notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.\n'}}

executing the mast notebooks

the notebooks in the mast repo are not executed. some of them are considerably and take time to execute on the fly. it makes more sense to pre compute them before operating on the documentation.

    from nobook.utils import Index

    from nobook.utils import Index

the nbconvert convert template to execute each notebook

    execute = """jupyter nbconvert \
    --to notebook --inplace \
    --execute --allow-errors \
    --ExecutePreprocessor.kernel_name=mast_nb %s"""

    execute = """jupyter nbconvert \
    --to notebook --inplace \
    --execute --allow-errors \
    --ExecutePreprocessor.kernel_name=mast_nb %s"""

an example command run for one notebook

    !jupyter nbconvert \
    --to notebook --inplace \
    --execute \
    --allow-errors \
    --ExecutePreprocessor.kernel_name=mast_nb \
    mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb

    !jupyter nbconvert \
    --to notebook --inplace \
    --execute \
    --allow-errors \
    --ExecutePreprocessor.kernel_name=mast_nb \
    mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb


        {'data': {'text/html': '!jupyter nbconvert \\\n--to notebook --inplace \\\n--execute \\\n--allow-errors \\\n--ExecutePreprocessor.kernel_name=mast_nb \\\nmast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb\n'}}

!jupyter nbconvert \
--to notebook --inplace \
--execute \
--allow-errors \
--ExecutePreprocessor.kernel_name=mast_nb \
mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb

doit task to execute all the notebooks

    def task_execute():
        for file in Index(["mast_notebooks"]).path().glob("**/*.ipynb", recursive=True).drop_duplicates():
            yield dict(
                name=str(file),
                file_dep=[file],
                actions=[
                    execute % file
                ]
            )

    def task_execute():
        for file in Index(["mast_notebooks"]).path().glob("**/*.ipynb", recursive=True).drop_duplicates():
            yield dict(
                name=str(file),
                file_dep=[file],
                actions=[
                    execute % file
                ]
            )

invoke the doit tasks

    %reload_ext doit

    %reload_ext doit

    %doit list  --all

    %doit list  --all

execute                                                                                                                                                                                         
execute:mast_notebooks/contributing/notebook_template/notebook_template.ipynb                                                                                                                   
execute:mast_notebooks/notebooks/GALEX/mis-mosaic/mis_mosaic.ipynb                                                                                                                              
execute:mast_notebooks/notebooks/HSC/HCV_API/HCV_API_demo.ipynb                                                                                                                                 
execute:mast_notebooks/notebooks/HSC/HCV_CASJOBS/HCV_casjobs_demo.ipynb                                                                                                                         
execute:mast_notebooks/notebooks/HSC/HSCV3_API/hscv3_api.ipynb                                                                                                                                  
execute:mast_notebooks/notebooks/HSC/HSCV3_SMC_API/hscv3_smc_api.ipynb                                                                                                                          
execute:mast_notebooks/notebooks/HSC/HSC_TAP/HSC_TAP.ipynb                                                                                                                                      
execute:mast_notebooks/notebooks/HSC/SWEEPS_HSCV3P1/sweeps_hscv3p1.ipynb                                                                                                                        
execute:mast_notebooks/notebooks/HSC/SWEEPS_HSCV3P1_API/sweeps_hscv3p1_api.ipynb                                                                                                                
execute:mast_notebooks/notebooks/IUE/exploring_UV_extinction_curves/exploring_UV_extinction_curves.ipynb                                                                                        
execute:mast_notebooks/notebooks/JWST/Engineering_Database_Retreival/EDB_Retrieval.ipynb                                                                                                        
execute:mast_notebooks/notebooks/JWST/SI_keyword_exoplanet_search/SI_keyword_exoplanet_search.ipynb                                                                                             
execute:mast_notebooks/notebooks/JWST/download_by_program_id/download_by_program_id.ipynb                                                                                                       
execute:mast_notebooks/notebooks/JWST/duplication_checking/duplication_checking.ipynb                                                                                                           
execute:mast_notebooks/notebooks/K2/Lightcurve/Lightcurve.ipynb                                                                                                                                 
execute:mast_notebooks/notebooks/K2/TPF/TPF.ipynb                                                                                                                                               
execute:mast_notebooks/notebooks/K2/beginner_how_to_use_ffi/beginner_how_to_use_ffi.ipynb                                                                                                       
execute:mast_notebooks/notebooks/K2/removing_instrumental_noise_using_pld/removing_instrumental_noise_using_pld.ipynb                                                                           
execute:mast_notebooks/notebooks/Kepler/creating_periodograms/creating_periodograms.ipynb                                                                                                       
execute:mast_notebooks/notebooks/Kepler/how_to_estimate_a_stars_mass_and_radius_using_asteroseismology/how_to_estimate_a_stars_mass_and_radius_using_asteroseismology.ipynb                     
execute:mast_notebooks/notebooks/Kepler/how_to_understand_and_manipulate_the_periodogram_of_an_oscillating_star/how_to_understand_and_manipulate_the_periodogram_of_an_oscillating_star.ipynb   
execute:mast_notebooks/notebooks/Kepler/identifying_transiting_planet_signals/identifying_transiting_planet_signals.ipynb                                                                       
execute:mast_notebooks/notebooks/Kepler/instrumental_noise_1_data_gaps_and_quality_flags/instrumental_noise_1_data_gaps_and_quality_flags.ipynb                                                 
execute:mast_notebooks/notebooks/Kepler/instrumental_noise_2_spurious_signals_and_time_sampling_effects/instrumental_noise_2_spurious_signals_and_time_sampling_effects.ipynb                   
execute:mast_notebooks/notebooks/Kepler/instrumental_noise_3_seasonal_and_detector_effects/instrumental_noise_3_seasonal_and_detector_effects.ipynb                                             
execute:mast_notebooks/notebooks/Kepler/instrumental_noise_4_electronic_noise/instrumental_noise_4_electronic_noise.ipynb                                                                       
execute:mast_notebooks/notebooks/Kepler/lightkurve_analyzing_lc_products/lightkurve_analyzing_lc_products.ipynb                                                                                 
execute:mast_notebooks/notebooks/Kepler/lightkurve_analyzing_tpf_products/lightkurve_analyzing_tpf_products.ipynb                                                                               
execute:mast_notebooks/notebooks/Kepler/lightkurve_combining_multiple_quarters/lightkurve_combining_multiple_quarters.ipynb                                                                     
execute:mast_notebooks/notebooks/Kepler/lightkurve_custom_aperture_photometry/lightkurve_custom_aperture_photometry.ipynb                                                                       
execute:mast_notebooks/notebooks/Kepler/lightkurve_interactively_inspecting_TPFs_and_LCs/lightkurve_interactively_inspecting_TPFs_and_LCs.ipynb                                                 
execute:mast_notebooks/notebooks/Kepler/lightkurve_searching_for_data/lightkurve_searching_for_data.ipynb                                                                                       
execute:mast_notebooks/notebooks/Kepler/measuring_a_rotation_period/measuring_a_rotation_period.ipynb                                                                                           
execute:mast_notebooks/notebooks/Kepler/plotting_catalog_over_FFI/plotting_catalog_over_FFI.ipynb                                                                                               
execute:mast_notebooks/notebooks/Kepler/plotting_dvts/plotting_dvts.ipynb                                                                                                                       
execute:mast_notebooks/notebooks/Kepler/plotting_images_from_tpf/plotting_images_from_tpf.ipynb                                                                                                 
execute:mast_notebooks/notebooks/Kepler/plotting_lightcurves/plotting_lightcurves.ipynb                                                                                                         
execute:mast_notebooks/notebooks/Kepler/verifying_the_location_of_a_signal/verifying_the_location_of_a_signal.ipynb                                                                             
execute:mast_notebooks/notebooks/Kepler/visualizing_periodic_signals_using_a_river_plot/visualizing_periodic_signals_using_a_river_plot.ipynb                                                   
execute:mast_notebooks/notebooks/MCCM/FIMS-SPEAR/hyperspectral_healpix_maps/hyperspectral_healpix_maps.ipynb                                                                                    
execute:mast_notebooks/notebooks/PanSTARRS/PS1_DR2_TAP/PS1_DR2_TAP.ipynb                                                                                                                        
execute:mast_notebooks/notebooks/PanSTARRS/PS1_image/PS1_image.ipynb                                                                                                                            
execute:mast_notebooks/notebooks/TESS/asteroid_rotation/asteroid_rotation.ipynb                                                                                                                 
execute:mast_notebooks/notebooks/TESS/asteroid_rotation/asteroid_rotation_soutions.ipynb                                                                                                        
execute:mast_notebooks/notebooks/TESS/beginner_astroquery_dv/beginner_astroquery_dv.ipynb                                                                                                       
execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_dvt/beginner_how_to_use_dvt.ipynb                                                                                                     
execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_ffi/beginner_how_to_use_ffi.ipynb                                                                                                     
execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_lc/beginner_how_to_use_lc.ipynb                                                                                                       
execute:mast_notebooks/notebooks/TESS/beginner_how_to_use_tp/beginner_how_to_use_tp.ipynb                                                                                                       
execute:mast_notebooks/notebooks/TESS/beginner_tess_exomast/beginner_tess_exomast.ipynb                                                                                                         
execute:mast_notebooks/notebooks/TESS/beginner_tess_tap_search/beginner_tess_tap_search.ipynb                                                                                                   
execute:mast_notebooks/notebooks/TESS/beginner_tesscut_astroquery/beginner_tesscut_astroquery.ipynb                                                                                             
execute:mast_notebooks/notebooks/TESS/beginner_tic_search_hd209458/beginner_tic_search_hd209458.ipynb                                                                                           
execute:mast_notebooks/notebooks/TESS/beginner_tour_lc_tp/beginner_tour_lc_tp.ipynb                                                                                                             
execute:mast_notebooks/notebooks/TESS/interm_gi_query/interm_gi_query.ipynb                                                                                                                     
execute:mast_notebooks/notebooks/TESS/interm_tasoc_lc/interm_tasoc_lc.ipynb                                                                                                                     
execute:mast_notebooks/notebooks/TESS/interm_tess_prf_retrieve/interm_tess_prf_retrieve.ipynb                                                                                                   
execute:mast_notebooks/notebooks/TESS/interm_tesscut_dss_overlay/interm_tesscut_dss_overlay.ipynb                                                                                               
execute:mast_notebooks/notebooks/TESS/interm_tesscut_requests/interm_tesscut_requests.ipynb                                                                                                     
execute:mast_notebooks/notebooks/TESS/removing_scattered_light_using_regression/removing_scattered_light_using_regression.ipynb                                                                 
execute:mast_notebooks/notebooks/astrocut/making_tess_cubes_and_cutouts/making_tess_cubes_and_cutouts.ipynb                                                                                     
execute:mast_notebooks/notebooks/astroquery/beginner_search/beginner_search.ipynb                                                                                                               
execute:mast_notebooks/notebooks/astroquery/beginner_zcut/beginner_zcut.ipynb                                                                                                                   
execute:mast_notebooks/notebooks/astroquery/historic_quasar_observations/historic_quasar_observations.ipynb                                                                                     
execute:mast_notebooks/notebooks/astroquery/large_downloads/large_downloads.ipynb                                                                                                               
execute:mast_notebooks/notebooks/astroquery/wildcard_searches/wildcard_searches.ipynb

%doit -n4 --continue